Index

A

add_tags() (lipi.stats.Statistic method)

C

close() (lipi.refpath.manager.RefPathManager method) commit() (lipi.refpath.manager.RefPathManager method) components (lipi.identifiers.IdentifierGroup attribute) (lipi.identifiers.IdentifierGroup property)

connected (lipi.refpath.manager.RefPathManager attribute) (lipi.refpath.manager.RefPathManager property) contains() (lipi.identifiers.IdentifierGroup method) create() (lipi.refpath.manager.RefPathManager static method)

D

db_path (lipi.refpath.manager.RefPathManager attribute) (lipi.refpath.manager.RefPathManager property)

E

entity_id (lipi.identifiers.IdentifierGroup attribute) (lipi.identifiers.IdentifierGroup property) exact_fas (lipi.network.nodes.LipidGroup attribute) (lipi.network.nodes.LipidGroup property)

exclude_fas (lipi.network.nodes.LipidGroup attribute) (lipi.network.nodes.LipidGroup property)

F

fa_carbon (lipi.network.nodes.Lipid attribute) fa_unsat (lipi.network.nodes.Lipid attribute) fas (lipi.network.nodes.Lipid attribute), [1]

find_filtered_lipid_stats_with_tags() (lipi.network.nodes.LipidGroup method) from_kwargs() (lipi.identifiers.Identifier static method) (lipi.stats.Statistic static method) from_name() (lipi.identifiers.IdentifierGroup static method)

G

get_read_only_connection() (lipi.refpath.manager.RefPathManager method)

I

Identifier (class in lipi.identifiers) IdentifierGroup (class in lipi.identifiers) igroup (lipi.network.nodes.Lipid attribute) (lipi.network.nodes.LipidGroup property) (lipi.network.nodes.Protein attribute)

ingest_kegg_pathway() (in module lipi.translation.kegg) ingest_lipid_maps_classes() (in module lipi.identifiers.ingestion.lipid_maps) ingest_yaml_pathway() (in module lipi.translation.yaml)

L

lipi module lipi.identifiers module lipi.identifiers.ingestion module lipi.identifiers.ingestion.lipid_maps module lipi.mapping module lipi.network module lipi.network.nodes module lipi.refpath module lipi.refpath.manager module lipi.stats module

lipi.translation module lipi.translation.kegg module lipi.translation.yaml module lipi.visualization module Lipid (class in lipi.network.nodes) LipidGroup (class in lipi.network.nodes) lipids (lipi.network.nodes.LipidGroup attribute) (lipi.network.nodes.LipidGroup property) lm_category (lipi.network.nodes.LipidGroup attribute) (lipi.network.nodes.LipidGroup property) lm_class (lipi.network.nodes.LipidGroup attribute) (lipi.network.nodes.LipidGroup property) lm_subclass (lipi.network.nodes.LipidGroup attribute) (lipi.network.nodes.LipidGroup property) load_pathway() (in module lipi.network) load_stats_from_csv() (in module lipi.stats)

M

map_omics_data_to_pathway() (in module lipi.mapping) Metabolite (class in lipi.network.nodes) module lipi lipi.identifiers lipi.identifiers.ingestion lipi.identifiers.ingestion.lipid_maps lipi.mapping lipi.network lipi.network.nodes lipi.refpath lipi.refpath.manager lipi.stats lipi.translation lipi.translation.kegg lipi.translation.yaml lipi.visualization

N

name (lipi.identifiers.Identifier attribute) (lipi.identifiers.IdentifierGroup attribute) (lipi.identifiers.IdentifierGroup property) (lipi.network.nodes.LipidGroup attribute)

P

plot_pathway_layout() (in module lipi.visualization)

plot_pathway_stats() (in module lipi.visualization) Protein (class in lipi.network.nodes)

R

reconnect() (lipi.refpath.manager.RefPathManager method) RefPathManager (class in lipi.refpath.manager)

require_fas (lipi.network.nodes.LipidGroup attribute) (lipi.network.nodes.LipidGroup property)

S

size (lipi.identifiers.IdentifierGroup property) Statistic (class in lipi.stats)

stats (lipi.network.nodes.Lipid attribute) (lipi.network.nodes.Protein attribute)

T

tags (lipi.identifiers.Identifier attribute) (lipi.stats.Statistic attribute)

V

value (lipi.stats.Statistic attribute)